Computational Reproducibility of Molecular Phylogenies
Molecular Biology and Evolution | 40:msad165 (23 pp)
Molecular Timetrees using Relaxed Clocks and Uncertain Phylogenies
Frontiers in Bioinformatics | 3:1225807 (13 pp)
The Origin of Eukaryotes and Rise in Complexity were Synchronous with the Rise in Oxygen
Frontiers in Bioinformatics | 3:1233281 (10 pp)
Improving Cellular Phylogenies through the Integrated Use of Mutation Order and Optimality Principles
Computational and Structural Biotechnology Journal | 21:3894–3903
Gene Expression Study of Breast Cancer using Welch Satterthwaite t-test, Kaplan-Meier Estimator Plot and Huber Loss Robust Regression Model
Journal of King Saud University - Science | 35:102447 (9 pp)
Bootstrap Confidence for Molecular Evolutionary Estimates from Tumor Bulk Sequencing Data
Frontiers in Bioinformatics | 3:1090730 (11 pp)
Protein Dynamics Provide Mechanistic Insights about Epistasis among Common Missense Polymorphisms
Biophysical Journal | 122:2938–2947
Discovering Research Articles Containing Evolutionary Timetrees by Machine Learning
Bioinformatics | 39:btad035 (7 pp)
Evolutionary Sparse Learning Reveals the Shared Genetic Basis of Convergent Traits
| (In review)
Split-Transformer Impute (ST): Genotype Imputation Using a Transformer-Based Model
bioRxiv | (in review)
Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics
| (in review)
Balancing Selection is Common for Beneficial Alleles in a Human Population
| (in review)
Masatoshi Nei (1931–2023)
Nature Ecology & Evolution | 7:(2 pp)
Masatoshi Nei (1931–2023)
Molecular Biology and Evolution | 40:msad149 (5 pp)
R3F: An R Package for Evolutionary Dates, Rates, and Priors using Relative Rate Framework
bioRxiv | (available)