Robust and Efficient Method for Estimating Confidence Limits for Phylogenomic Inferences of Organismal Relationships

Molecular Biology and Evolution | (accepted)

S. Sharma, S. Kumar

R3F: An R Package for Evolutionary Dates, Rates, and Priors using Relative Rate Framework

arXiv | (available)

Q. Tao, S. Sharma, K. Tamura, S. Kumar

Treemble: A Graphical Tool to Generate Newick Strings from Phylogenetic Tree Images

Bioinformatics | in review

J. Allard, S. Kumar

The Genetic Foundations of Convergent Traits

Nature Reviews Genetics | in revision

J. Allard, S. Kumar

Entrenchment and Contingency in Neutral Protein Evolution with Epistasis

Genome Biology | in revision

L. Schmelkin , V. Carnevale, A. Haldane, J. Townsend, S. Chung, R. Levy, S. Kumar

Nutrigenomics: From Epicure to Epigenetics - Engaging Students with Nutrition Through the Human Genome

The American Biology Teacher | in revision

C. Babaian, S. Kumar

An Evolutionary Metric for Estimating PhyloAges from Bulk Sequencing of Hematopoietic Stem Cells Reveals the Tempo of Blood Aging in Cancer and Longevity

Journal of Molecular Evolution | in revision

J. M. Craig, R. M. Tobin, W. Wolfsberger, T. K. Oleksyk, S. Miura, G. S. Gerhard, S. Kumar

Evolutionary dynamics of early and late mutational signatures in metastatic cancer

Frontiers in Bioinformatics | in review

A. Yankovskiy, S. Kumar, S. Miura

TRUHiC: A TRansformer-Embedded U-2 Net to Enhance Hi-C Data for 3D Chromatin Structure Characterization

Nature Communications | (submitted)

C. Li, M.E. Mowlaei, V. Carnevale, S. Kumar, X. Shi

A collaborative genomics platform for T1D research in Eastern and Central Europe

Metabologia | in submission

K. Shchubelka,..., S, Sharma,..., S. Kumar,..., T. K. Oleksynk